Package: MLML2R
Type: Package
Title: Maximum Likelihood Estimation of DNA Methylation and
        Hydroxymethylation Proportions
Version: 0.3.3
Author: Samara Kiihl [aut, cre], Maria Jose Martinez-Garrido [aut],
        Arce Domingo-Relloso [aut], Jose Bermudez [aut], Maria
        Tellez-Plaza [aut]
Maintainer: Samara Kiihl <samara@ime.unicamp.br>
Description: Maximum likelihood estimates (MLE) of the proportions of
        5-mC and 5-hmC in the DNA using information from BS-conversion,
        TAB-conversion, and oxBS-conversion methods. One can use
        information from all three methods or any combination of two of
        them. Estimates are based on Binomial model by Qu et al. (2013)
        <doi:10.1093/bioinformatics/btt459> and Kiihl et al. (2019)
        <doi:10.1515/sagmb-2018-0031>.
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
LazyData: true
biocViews: Software, MethylationArray, Epigenetics, DNAMethylation,
        Microarray, TwoChannel, OneChannel
RoxygenNote: 6.1.1
URL: https://github.com/samarafk/MLML2R
Suggests: minfi, microbenchmark, GEOquery, knitr, rmarkdown,
        IlluminaHumanMethylation450kmanifest
BugReports: https://github.com/samarafk/MLML2R/issues
Repository: https://samarafk.r-universe.dev
Date/Publication: 2019-10-17 10:17:39 UTC
RemoteUrl: https://github.com/samarafk/mlml2r
RemoteRef: HEAD
RemoteSha: f113831f46d35c72b26351b01facbdd7653be73a
NeedsCompilation: no
Packaged: 2026-05-28 10:17:18 UTC; root