Package: MLML2R 0.3.3

MLML2R: Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions

Maximum likelihood estimates (MLE) of the proportions of 5-mC and 5-hmC in the DNA using information from BS-conversion, TAB-conversion, and oxBS-conversion methods. One can use information from all three methods or any combination of two of them. Estimates are based on Binomial model by Qu et al. (2013) <doi:10.1093/bioinformatics/btt459> and Kiihl et al. (2019) <doi:10.1515/sagmb-2018-0031>.

Authors:Samara Kiihl [aut, cre], Maria Jose Martinez-Garrido [aut], Arce Domingo-Relloso [aut], Jose Bermudez [aut], Maria Tellez-Plaza [aut]

MLML2R_0.3.3.tar.gz
MLML2R_0.3.3.zip(r-4.5)MLML2R_0.3.3.zip(r-4.4)MLML2R_0.3.3.zip(r-4.3)
MLML2R_0.3.3.tgz(r-4.5-any)MLML2R_0.3.3.tgz(r-4.4-any)MLML2R_0.3.3.tgz(r-4.3-any)
MLML2R_0.3.3.tar.gz(r-4.5-noble)MLML2R_0.3.3.tar.gz(r-4.4-noble)
MLML2R_0.3.3.tgz(r-4.4-emscripten)MLML2R_0.3.3.tgz(r-4.3-emscripten)
MLML2R.pdf |MLML2R.html✨
MLML2R/json (API)

# Install 'MLML2R' in R:
install.packages('MLML2R', repos = c('https://samarafk.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/samarafk/mlml2r/issues

Datasets:

On CRAN:

Conda:

softwaremethylationarrayepigeneticsdnamethylationmicroarraytwochannelonechannel

4.34 score 2 stars 22 scripts 296 downloads 1 mentions 1 exports 0 dependencies

Last updated 5 years agofrom:f113831f46. Checks:7 OK, 2 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 07 2025
R-4.5-winOKMar 07 2025
R-4.5-macOKMar 07 2025
R-4.5-linuxOKMar 07 2025
R-4.4-winOKMar 07 2025
R-4.4-macOKMar 07 2025
R-4.4-linuxOKMar 07 2025
R-4.3-winNOTEMar 07 2025
R-4.3-macNOTEMar 07 2025

Exports:MLML

Dependencies:

MLML2R package User's Guide

Samara F. Kiihl and Maria Tellez-Plaza

Rendered fromvignette.Rmdusingknitr::rmarkdownon Mar 07 2025.

Last update: 2019-10-17
Started: 2017-12-13